Hi Kishore,
Check whether both company codes invoices have same payment method. Then check the settings in FBZP for that country/payment method combination. It should be PMW radio buttion selected along with PMW ZCGI*.
Check the OBPM4 setup for both company code/house bank combination- whether same variant is assigned or not.
Then check the variant values for program SAPFPAYM - whether File name has screen output or server path.
Cheers,
Ravish Prabhu